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This fixes pkg_conflicts where there are no packages or only one
packages in the system
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If '-x' fails on a directory it means that we cannot see the content
inside. It is pointless to check if it is a directory.
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'-d' is not needed as sort will always list the directories first.
Dropping '-d' also makes it faster than awk.
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This introduces a few changes in manifest checking.
* If KISS_FORCE is specified, we don't check the manifest.
* This will show every missing file, and won't die in the first manifest issue.
* kiss will announce dependency checking after manifest checking is complete.
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